| distance | reference number | name | latitude | longitude |
| 25.3 | 1139 | Grant Line Canal (drawbridge), Old River, Californi | 37.8167 | -121.45 |
| 29.8 | 306 | Borden Highway Bridge, Middle River, San Joaquin Ri | 37.8917 | -121.488 |
| 30.2 | 670 | Coyote Creek, Tributary #1, San Francisco Bay, Cali | 37.45 | -121.967 |
| 30.3 | 307 | Borden Highway Bridge, Old River, San Joaquin River | 37.89 | -121.57 |
| 30.5 | 1116 | Gold Street Bridge, Alviso Slough, San Francisco Ba | 37.4233 | -121.975 |
| 32.4 | 1304 | Holt, Whiskey Slough, San Joaquin River, California | 37.9333 | -121.433 |
| 32.5 | 3187 | Upper Guadalupe Slough, San Francisco Bay, Californ | 37.435 | -122.007 |
| 32.9 | 2143 | Orwood, Old River, San Joaquin River, California | 37.9333 | -121.567 |
| 33.6 | 669 | Coyote Creek, Alviso Slough, San Francisco Bay, Cal | 37.4633 | -122.023 |
| 33.6 | 668 | Coyote Creek, Alviso Slough, San Francisco Bay, Cal | 37.465 | -122.023 |
| 34.6 | 1905 | Mowry Slough, San Francisco Bay, California | 37.5 | -122.033 |
| 35.4 | 2965 | Stockton, California | 37.9583 | -121.29 |
| 36.1 | 272 | Blackslough Landing, San Joaquin River, California | 37.995 | -121.422 |
| 36.3 | 397 | Calaveras Point, west of, San Francisco Bay, Califo | 37.4667 | -122.067 |
| 36.6 | 906 | Elkhorn Slough railroad bridge, California | 36.8567 | -121.755 |
| 36.6 | 907 | Elkhorn Slough railroad bridge, Monterery Bay, Cali | 36.8567 | -121.755 |
| 37.2 | 1528 | Kirby Park, Elkhorn Slough, California | 36.8417 | -121.747 |
| 37.7 | 1986 | Newark Slough, San Francisco Bay, California | 37.5167 | -122.083 |
| 37.7 | 1529 | Kirby Park, Elkhorn Slough, Monterey Bay, Californi | 36.8333 | -121.75 |
| 38.5 | 908 | Elkhorn Slough, Elkhorn, California | 36.8183 | -121.747 |
| 38.5 | 912 | Elkhorn, California | 36.8183 | -121.747 |
| 38.5 | 2179 | Palo Alto Yacht Harbor, California | 37.4583 | -122.105 |
| 38.9 | 1390 | Irish Landing, Sand Mound Slough, San Joaquin River | 38.0333 | -121.583 |
| 39.0 | 263 | Bishop Cut, Disappointment Slough, San Joaquin Rive | 38.0433 | -121.418 |
| 39.0 | 2165 | Pacific Mariculture Dock, Elkhorn Slough, Monterey | 36.8133 | -121.758 |