| distance | reference number | name | latitude | longitude |
| 7.5 | 23 | Alameda Creek, San Francisco Bay, California | 37.595 | -122.145 |
| 7.9 | 671 | Coyote Hills Slough entrance, San Francisco Bay, Ca | 37.5633 | -122.128 |
| 9.1 | 1986 | Newark Slough, San Francisco Bay, California | 37.5167 | -122.083 |
| 9.3 | 2651 | San Leandro Marina, San Francisco Bay, California | 37.695 | -122.192 |
| 9.3 | 2652 | San Leandro Marina, San Francisco Bay, California ( | 37.695 | -122.192 |
| 9.4 | 2655 | San Mateo Bridge (east end), San Francisco Bay, Cal | 37.6 | -122.183 |
| 9.6 | 2560 | Roberts Landing, 1.3 miles west of, San Francisco B | 37.6667 | -122.2 |
| 9.8 | 1905 | Mowry Slough, San Francisco Bay, California | 37.5 | -122.033 |
| 10.2 | 2856 | South Bay Wreck, San Francisco Bay, California | 37.55 | -122.167 |
| 10.4 | 826 | Dumbarton Bridge, California | 37.5067 | -122.115 |
| 10.4 | 827 | Dumbarton Bridge, San Francisco Bay, California | 37.5067 | -122.115 |
| 10.9 | 2078 | Oakland Airport, San Francisco Bay, California | 37.7317 | -122.208 |
| 11.9 | 397 | Calaveras Point, west of, San Francisco Bay, Califo | 37.4667 | -122.067 |
| 11.9 | 668 | Coyote Creek, Alviso Slough, San Francisco Bay, Cal | 37.465 | -122.023 |
| 12.0 | 669 | Coyote Creek, Alviso Slough, San Francisco Bay, Cal | 37.4633 | -122.023 |
| 12.0 | 2523 | Redwood Creek, C.M. No. 8, San Francisco Bay, Calif | 37.5333 | -122.193 |
| 12.3 | 2524 | Redwood Creek, Marker 8, California | 37.5333 | -122.2 |
| 12.8 | 2650 | San Leandro Channel, San Leandro Bay, San Francisco | 37.7483 | -122.235 |
| 12.9 | 2179 | Palo Alto Yacht Harbor, California | 37.4583 | -122.105 |
| 13.0 | 2522 | Redwood Creek entrance (inside), San Francisco Bay, | 37.5167 | -122.2 |
| 13.0 | 182 | Bay Slough, east end, San Francisco Bay, California | 37.545 | -122.222 |
| 13.1 | 3302 | West Point Slough, San Francisco Bay, California | 37.505 | -122.192 |
| 13.4 | 2080 | Oakland Harbor, Park Street Bridge, San Francisco B | 37.7717 | -122.235 |
| 13.5 | 670 | Coyote Creek, Tributary #1, San Francisco Bay, Cali | 37.45 | -121.967 |
| 13.7 | 2656 | San Mateo Bridge (west end), California | 37.58 | -122.253 |