| distance | reference number | name | latitude | longitude |
| 17.9 | 670 | Coyote Creek, Tributary #1, San Francisco Bay, Cali | 37.45 | -121.967 |
| 18.9 | 1116 | Gold Street Bridge, Alviso Slough, San Francisco Ba | 37.4233 | -121.975 |
| 20.4 | 3187 | Upper Guadalupe Slough, San Francisco Bay, Californ | 37.435 | -122.007 |
| 20.8 | 668 | Coyote Creek, Alviso Slough, San Francisco Bay, Cal | 37.465 | -122.023 |
| 20.9 | 669 | Coyote Creek, Alviso Slough, San Francisco Bay, Cal | 37.4633 | -122.023 |
| 21.0 | 1905 | Mowry Slough, San Francisco Bay, California | 37.5 | -122.033 |
| 21.4 | 1139 | Grant Line Canal (drawbridge), Old River, Californi | 37.8167 | -121.45 |
| 21.6 | 307 | Borden Highway Bridge, Old River, San Joaquin River | 37.89 | -121.57 |
| 23.4 | 397 | Calaveras Point, west of, San Francisco Bay, Califo | 37.4667 | -122.067 |
| 23.8 | 306 | Borden Highway Bridge, Middle River, San Joaquin Ri | 37.8917 | -121.488 |
| 23.9 | 1986 | Newark Slough, San Francisco Bay, California | 37.5167 | -122.083 |
| 24.1 | 2143 | Orwood, Old River, San Joaquin River, California | 37.9333 | -121.567 |
| 25.7 | 2179 | Palo Alto Yacht Harbor, California | 37.4583 | -122.105 |
| 25.9 | 826 | Dumbarton Bridge, California | 37.5067 | -122.115 |
| 25.9 | 827 | Dumbarton Bridge, San Francisco Bay, California | 37.5067 | -122.115 |
| 26.5 | 671 | Coyote Hills Slough entrance, San Francisco Bay, Ca | 37.5633 | -122.128 |
| 27.6 | 1304 | Holt, Whiskey Slough, San Joaquin River, California | 37.9333 | -121.433 |
| 27.7 | 23 | Alameda Creek, San Francisco Bay, California | 37.595 | -122.145 |
| 28.9 | 2856 | South Bay Wreck, San Francisco Bay, California | 37.55 | -122.167 |
| 29.3 | 80 | Antioch, San Joaquin River, California | 38.02 | -121.815 |
| 29.7 | 1390 | Irish Landing, Sand Mound Slough, San Joaquin River | 38.0333 | -121.583 |
| 30.0 | 2655 | San Mateo Bridge (east end), San Francisco Bay, Cal | 37.6 | -122.183 |
| 30.4 | 963 | False River, San Joaquin River, California | 38.055 | -121.655 |
| 30.4 | 2523 | Redwood Creek, C.M. No. 8, San Francisco Bay, Calif | 37.5333 | -122.193 |
| 30.5 | 3302 | West Point Slough, San Francisco Bay, California | 37.505 | -122.192 |