| distance | reference number | name | latitude | longitude |
| 1.1 | 3381 | Woodbridge Creek, 0.8 n.mi. above entrance, Arthur | 40.545 | -74.265 |
| 2.1 | 2591 | Rossville, Arthur Kill, New York | 40.555 | -74.2233 |
| 3.1 | 2852 | South Amboy, New Jersey | 40.4917 | -74.2817 |
| 3.1 | 2853 | South Amboy, Raritan River, New Jersey | 40.4917 | -74.2817 |
| 3.3 | 2447 | Princes Bay, New Jersey | 40.5117 | -74.2 |
| 4.0 | 1480 | Keasbey, Raritan River, New Jersey | 40.5083 | -74.3117 |
| 4.0 | 471 | Carteret, Arthur Kill, New Jersey | 40.5867 | -74.21 |
| 4.0 | 2499 | Rahway River, RR. Bridge, Arthur Kill, New Jersey | 40.5983 | -74.2317 |
| 5.0 | 532 | Chelsea, Arthur Kill, New Jersey | 40.6 | -74.2 |
| 5.0 | 529 | Cheesequake Creek, Garden State Parkway, New Jersey | 40.4533 | -74.2733 |
| 6.3 | 1779 | Matawan Creek, Route 35 bridge, New Jersey | 40.4333 | -74.2183 |
| 6.4 | 1502 | Keyport, New Jersey | 40.44 | -74.1983 |
| 6.6 | 1151 | Great Kills Harbor, New York | 40.5433 | -74.14 |
| 7.2 | 2699 | Sayreville, Raritan River, New Jersey | 40.4783 | -74.3567 |
| 7.9 | 2389 | Port Ivory, Howland Hook, Arthur Kill, New York | 40.645 | -74.18 |
| 8.2 | 1478 | Keansburg, Waackaack Creek, New Jersey | 40.4483 | -74.1433 |
| 8.9 | 234 | Bergen Point West Reach, Kill Van Kull, New York | 40.64 | -74.1467 |
| 9.8 | 2107 | Old Bridge, Raritan River, South River, New Jersey | 40.4167 | -74.3633 |
| 10.7 | 2372 | Port Elizabeth, New Jersey | 40.6733 | -74.14 |
| 10.7 | 2373 | Port Elizabeth, Newark Bay, New Jersey | 40.6733 | -74.14 |
| 11.4 | 2403 | Port Newark Terminal, New Jersey | 40.6833 | -74.1333 |
| 11.4 | 1967 | New Brunswick, Raritan River, New Jersey | 40.4883 | -74.435 |
| 12.2 | 1508 | Kill Van Kull, Constable Hook, New Jersey | 40.655 | -74.0867 |
| 12.3 | 625 | Constable Hook, Upper Bay, New Jersey | 40.655 | -74.085 |
| 12.5 | 2914 | St. George, Staten Island, New York | 40.6433 | -74.0733 |