| distance | reference number | name | latitude | longitude |
| 1.6 | 294 | Bodega Harbor entrance, California | 38.3 | -123.05 |
| 7.0 | 3111 | Tomales Bay entrance, California | 38.2333 | -122.983 |
| 11.6 | 276 | Blakes Landing, Tomales Bay, California | 38.19 | -122.917 |
| 13.3 | 1768 | Marshall, Tomales Bay, California | 38.1667 | -122.9 |
| 14.9 | 2531 | Reynolds, Tomales Bay, California | 38.1467 | -122.883 |
| 16.4 | 1037 | Fort Ross, California | 38.5167 | -123.25 |
| 18.3 | 1388 | Inverness, Tomales Bay, California | 38.1 | -122.85 |
| 20.3 | 809 | Drakes Bay, Point Reyes, California | 37.9967 | -122.975 |
| 20.3 | 2326 | Point Reyes, California | 37.9967 | -122.975 |
| 26.9 | 3186 | Upper drawbridge, Petaluma River, San Pablo Bay, Ca | 38.2333 | -122.617 |
| 30.3 | 1588 | Lakeville, Petaluma River, San Pablo Bay, Californi | 38.2 | -122.567 |
| 32.0 | 1289 | Hog Island, San Antonio Creek, San Pablo Bay, Calif | 38.1567 | -122.55 |
| 33.5 | 300 | Bolinas Lagoon, California | 37.91 | -122.682 |
| 35.8 | 2230 | Petaluma River entrance, San Pablo Bay, California | 38.1117 | -122.498 |
| 37.7 | 2883 | Southeast Farallon Island, California | 37.7 | -123 |
| 37.9 | 3370 | Wingo, Sonoma Creek, San Pablo Bay, California | 38.2167 | -122.433 |
| 38.0 | 1067 | Gallinas Creek, San Pablo Bay, California | 38.015 | -122.503 |
| 39.8 | 652 | Corte Madera Creek, San Francisco Bay, California | 37.9433 | -122.513 |
| 40.2 | 2851 | Sonoma Creek, San Pablo Bay, California | 38.1567 | -122.407 |
| 41.7 | 2328 | Point San Pedro, San Pablo Bay, California | 37.99 | -122.447 |
| 41.7 | 2329 | Point San Quentin, San Francisco Bay, California | 37.945 | -122.473 |
| 42.0 | 2645 | San Francisco Bar, California | 37.7667 | -122.633 |
| 43.1 | 2323 | Point Orient, San Francisco Bay, California | 37.9667 | -122.433 |
| 43.6 | 2687 | Sausalito, Corps of Engineers Dock, San Francisco B | 37.865 | -122.493 |
| 43.8 | 2298 | Point Bonita, Bonita Cove, San Francisco Bay, Calif | 37.8167 | -122.533 |